STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89732.1Transcriptional regulator, DeoR family; KEGG: hip:CGSHiEE_02055 2.2e-23 fucI; L-fucose isomerase K02430. (253 aa)    
Predicted Functional Partners:
KXG90306.1
Phosphotransferase system, EIIC; KEGG: efa:EF0694 2.0e-130 PTS system fructose-specific transporter subunit IIBC; K02769 PTS system, fructose-specific IIB component K02770; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.595
KXG90307.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: ols:Olsu_0535 2.6e-50 PTS system D-fructose-specific IIA component (F1P-forming), Frc family; K02768 PTS system, fructose-specific IIA component; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.595
KXG89731.1
Hypothetical protein.
       0.570
KXG89733.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: str:Sterm_3554 2.5e-22 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02773 PTS system, galactitol-specific IIA component; Psort location: Cytoplasmic, score: 9.97.
  
    0.507
KXG89730.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.500
KXG89396.1
KEGG: ols:Olsu_0122 4.3e-57 ribose-5-phosphate isomerase K01808; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.465
KXG89735.1
KEGG: lru:HMPREF0538_20846 3.9e-95 PTS system galactitol-specific transporter subunit IIC K02775; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.464
KXG89728.1
Integrase core domain protein; KEGG: efc:EFAU004_01904 1.2e-22 ISEnfa3, transposase; Psort location: Cytoplasmic, score: 7.50.
  
    0.451
KXG89729.1
Transposase domain protein; KEGG: efc:EFAU004_00210 1.1e-20 ISEnfa3, transposase; Psort location: Cytoplasmic, score: 7.50.
       0.450
KXG89734.1
Hypothetical protein; KEGG: str:Sterm_3553 2.4e-17 PTS system lactose/cellobiose-specific transporter subunit IIB; K02774 PTS system, galactitol-specific IIB component.
       0.426
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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