STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89594.1DNA-binding helix-turn-helix protein; KEGG: sgg:SGGBAA2069_c10720 0.0045 transcriptional regulator; Psort location: CytoplasmicMembrane, score: 10.00. (328 aa)    
Predicted Functional Partners:
KXG90987.1
KEGG: ols:Olsu_0499 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.812
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.782
KXG89576.1
Hypothetical protein; KEGG: ols:Olsu_0702 4.1e-14 amidohydrolase; K01950 NAD+ synthase (glutamine-hydrolysing).
    
 0.782
KXG90204.1
DNA-binding helix-turn-helix protein; KEGG: pva:Pvag_1772 0.00012 prpA; LexA repressor; Psort location: CytoplasmicMembrane, score: 9.55.
  
     0.610
KXG89595.1
Hypothetical protein.
       0.534
KXG89593.1
Hypothetical protein; KEGG: gvg:HMPREF0421_21050 1.3e-14 GNAT family acetyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
    0.460
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.