STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89539.1Hypothetical protein. (50 aa)    
Predicted Functional Partners:
pheS
KEGG: ols:Olsu_0544 1.0e-149 phenylalanyl-tRNA synthetase subunit alpha K01889; Psort location: Cytoplasmic, score: 10.00.
       0.723
pheT
KEGG: ols:Olsu_0545 3.6e-298 phenylalanyl-tRNA synthetase subunit beta K01890; Psort location: Cytoplasmic, score: 9.97.
       0.605
KXG89536.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.439
KXG89540.1
KEGG: apv:Apar_0747 4.8e-19 HAD-superfamily hydrolase; K07757 sugar-phosphatase; Psort location: Cytoplasmic, score: 7.50.
       0.437
KXG89534.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.426
KXG89535.1
UbiC transcription regulator-associated domain protein; KEGG: reh:H16_A3019 8.2e-15 hutC; histidine utilization repressor K05836; Psort location: Cytoplasmic, score: 7.50.
       0.426
KXG89541.1
KEGG: ols:Olsu_0539 1.9e-127 N-acetylglucosamine 6-phosphate deacetylase K01443; Psort location: Cytoplasmic, score: 7.50.
       0.405
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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