STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89584.1SufB/sufD domain protein; KEGG: apb:SAR116_0016 3.8e-07 Fe-S center production/stability protein SufD K09015; Psort location: Cytoplasmic, score: 7.50. (407 aa)    
Predicted Functional Partners:
KXG89582.1
FeS assembly ATPase SufC; KEGG: crd:CRES_1064 1.1e-53 sufC; Fe-S cluster assembly ABC transporter ATP-binding protein K09013; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.995
KXG89585.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.983
KXG89583.1
KEGG: efl:EF62_2612 1.4e-120 sufB; FeS assembly protein SufB K09014; Psort location: Cytoplasmic, score: 7.50.
 
     0.956
KXG89587.1
SUF system FeS assembly protein, NifU family; KEGG: hbo:Hbor_34450 6.3e-06 cysteine desulfurase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.942
KXG89580.1
Transcriptional regulator, Spx/MgsR family; KEGG: cpe:CPE2362 1.2e-22 ArsC family protein; K00537 arsenate reductase; Psort location: CytoplasmicMembrane, score: 8.16; Belongs to the ArsC family.
     
 0.541
KXG89581.1
Hypothetical protein.
       0.529
KXG89579.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
    0.503
KXG89578.1
UvrD/REP helicase; KEGG: kol:Kole_1028 4.6e-45 Exodeoxyribonuclease V; Psort location: Cytoplasmic, score: 9.97; Belongs to the helicase family. UvrD subfamily.
 
    0.428
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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