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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89333.1MATE domain protein; KEGG: rlt:Rleg2_4805 1.7e-15 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00. (485 aa)    
Predicted Functional Partners:
KXG89330.1
Efflux ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c11620 3.2e-94 putative ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.623
KXG90814.1
KEGG: bpb:bpr_I2050 3.2e-155 gap; glyceraldehyde-3-phosphate dehydrogenase Gap K00134; Psort location: Cytoplasmic, score: 9.67.
   
  
 0.592
KXG90816.1
KEGG: fal:FRAAL1781 3.1e-118 rpsA; 30S ribosomal protein S1 K02945; Psort location: Cytoplasmic, score: 9.97.
   
    0.570
KXG89332.1
DJ-1 family protein; KEGG: scp:HMPREF0833_10842 6.0e-28 rimI; ribosomal-protein-alanine acetyltransferase K03152; Psort location: Cytoplasmic, score: 7.50.
       0.556
KXG89331.1
ABC transporter, ATP-binding protein; KEGG: taz:TREAZ_1964 5.5e-73 macrolide export ATP-binding/permease MacB K02003; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.434
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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