STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89342.1KEGG: pgv:SL003B_4317 0.00024 rimI; GNAT family acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase; Psort location: CytoplasmicMembrane, score: 8.16. (228 aa)    
Predicted Functional Partners:
KXG89805.1
DNA-binding helix-turn-helix protein; KEGG: apb:SAR116_1068 0.0011 transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.781
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.778
tsaD
Ribosomal-protein-alanine acetyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.633
KXG89343.1
Nitroreductase family protein; KEGG: fnu:FN1254 5.7e-23 dihydropteridine reductase K00540; Psort location: Cytoplasmic, score: 7.50.
       0.558
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.477
KXG89341.1
Peptidase, A24 family; KEGG: lgv:LCGL_1761 5.7e-06 type IV prepilin peptidase; K02236 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.468
KXG89344.1
ABC transporter, ATP-binding protein; KEGG: ols:Olsu_1166 1.0e-160 ABC transporter; K02010 iron(III) transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
       0.444
KXG89345.1
ABC transporter, permease protein; KEGG: cnc:CNE_2c19150 6.4e-47 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02011; Psort location: CytoplasmicMembrane, score: 10.00.
       0.444
KXG90298.1
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein; KEGG: ols:Olsu_0510 1.7e-110 Orn/DAP/Arg decarboxylase 2; K01586 diaminopimelate decarboxylase; Psort location: Cytoplasmic, score: 7.50.
   
  0.426
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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