STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89349.1KEGG: ehi:EHI_187200 0.00068 12.t00005; CAAX prenyl protease family; K08658 prenyl protein peptidase; Psort location: CytoplasmicMembrane, score: 10.00. (242 aa)    
Predicted Functional Partners:
KXG91356.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.618
KXG89343.1
Nitroreductase family protein; KEGG: fnu:FN1254 5.7e-23 dihydropteridine reductase K00540; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.545
KXG89350.1
Hypothetical protein.
       0.488
KXG89351.1
SapB family protein; KEGG: hip:CGSHiEE_08975 3.5e-23 coaD; phosphopantetheine adenylyltransferase K07507; Psort location: CytoplasmicMembrane, score: 10.00.
       0.419
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.