rpmE protein (Atopobium vaginae) - STRING interaction network

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Score

rpmE

Ribosomal protein L31; Binds the 23S rRNA. (151 aa)

Predicted Functional Partners:

rpmB

0.982

rpsP

0.982

rpsF

0.980

rpsT

0.979

rpsO

0.979

rplS

0.979

rplU

0.978

rpmG

0.978

rpmA

0.975

rplM

0.975

Your Current Organism:

Atopobium vaginae

NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplS	HMPREF3232_00930	HMPREF3232_00139	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.988
rplM	rplU	HMPREF3232_00930	HMPREF3232_00453	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.983
rplM	rpmA	HMPREF3232_00930	HMPREF3232_00454	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L27; KEGG: apb:SAR116_1855 1.7e-21 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family.	0.988
rplM	rpmB	HMPREF3232_00930	HMPREF3232_00413	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00086 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bL28 family.	0.980
rplM	rpmE	HMPREF3232_00930	HMPREF3232_00967	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L31; Binds the 23S rRNA.	0.975
rplM	rpmG	HMPREF3232_00930	HMPREF3232_01306	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L33; KEGG: mmo:MMOB5490 8.1e-08 rpmG; 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL33 family.	0.979
rplM	rpsF	HMPREF3232_00930	HMPREF3232_01423	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.990
rplM	rpsO	HMPREF3232_00930	HMPREF3232_00070	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.981
rplM	rpsP	HMPREF3232_00930	HMPREF3232_01100	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S16; KEGG: apb:SAR116_1817 2.0e-20 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS16 family.	0.982
rplM	rpsT	HMPREF3232_00930	HMPREF3232_00057	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.981
rplS	rplM	HMPREF3232_00139	HMPREF3232_00930	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.988
rplS	rplU	HMPREF3232_00139	HMPREF3232_00453	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.981
rplS	rpmA	HMPREF3232_00139	HMPREF3232_00454	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L27; KEGG: apb:SAR116_1855 1.7e-21 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family.	0.987
rplS	rpmB	HMPREF3232_00139	HMPREF3232_00413	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00086 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bL28 family.	0.981
rplS	rpmE	HMPREF3232_00139	HMPREF3232_00967	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L31; Binds the 23S rRNA.	0.979
rplS	rpmG	HMPREF3232_00139	HMPREF3232_01306	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein L33; KEGG: mmo:MMOB5490 8.1e-08 rpmG; 50S ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL33 family.	0.967
rplS	rpsF	HMPREF3232_00139	HMPREF3232_01423	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.990
rplS	rpsO	HMPREF3232_00139	HMPREF3232_00070	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.980
rplS	rpsP	HMPREF3232_00139	HMPREF3232_01100	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S16; KEGG: apb:SAR116_1817 2.0e-20 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rplS	rpsT	HMPREF3232_00139	HMPREF3232_00057	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.964