STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89424.123S rRNA methyltransferase family protein; KEGG: ols:Olsu_0072 2.0e-137 SAM-dependent methyltransferase K06969; Psort location: Cytoplasmic, score: 7.50. (430 aa)    
Predicted Functional Partners:
KXG89423.1
Phosphodiesterase family protein; KEGG: ppo:PPM_2222 2.4e-33 yfcE; phosphodiesterase yfcE K07095; Psort location: Cytoplasmic, score: 7.50.
 
     0.620
KXG89425.1
ImpB/MucB/SamB family protein; KEGG: cgo:Corgl_0698 6.5e-102 DNA-directed DNA polymerase K03502; Psort location: Cytoplasmic, score: 7.50.
       0.453
KXG90835.1
S4 domain protein; KEGG: ols:Olsu_0914 1.8e-67 ribosomal large subunit pseudouridine synthase B K06178; Psort location: Cytoplasmic, score: 9.67; Belongs to the pseudouridine synthase RsuA family.
   
   0.441
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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