STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89451.1HTH domain protein; KEGG: crn:CAR_c21580 1.1e-06 licR1; licABCH operon regulator K03491; Psort location: CytoplasmicMembrane, score: 8.16. (577 aa)    
Predicted Functional Partners:
KXG89449.1
Putative maltose regulon modulator MalY; KEGG: lra:LRHK_475 5.6e-119 malY; protein MalY; K14155 cystathione beta-lyase.
       0.773
KXG89452.1
KEGG: ols:Olsu_0711 9.8e-99 dipeptidase; K01439 succinyl-diaminopimelate desuccinylase.
       0.773
KXG89448.1
PTS system fructose-specific EIIBC component family protein; KEGG: lrl:LC705_00461 4.1e-171 frvB; putative PTS system transporter subunits IIBC; K11202 PTS system, fructose-specific IIB-like component K11203; Psort location: CytoplasmicMembrane, score: 10.00.
       0.486
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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