Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXG89466.1Hypothetical protein. (53 aa)    
Predicted Functional Partners:
KXG89467.1
Hypothetical protein; KEGG: hpa:HPAG1_1423 4.7e-51 hemolysin domain-containing protein K00088; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
KXG89465.1
Hypothetical protein; KEGG: gpo:GPOL_c27030 3.7e-07 lgt; prolipoprotein diacylglyceryl transferase Lgt; Psort location: Cytoplasmic, score: 7.50.
       0.768
KXG89468.1
KEGG: ddf:DEFDS_1775 6.1e-122 translation elongation factor G K02355; Psort location: Cytoplasmic, score: 9.97.
       0.410
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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