STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89470.1Putative 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: apv:Apar_0053 1.9e-72 TrmA family RNA methyltransferase; K00599; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (537 aa)    
Predicted Functional Partners:
KXG91110.1
Hypothetical protein; KEGG: rho:RHOM_13395 1.6e-21 RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
      0.890
KXG89471.1
Hypothetical protein.
       0.572
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.555
KXG89472.1
Hypothetical protein; KEGG: cag:Cagg_1378 1.6e-57 type II site-specific deoxyribonuclease; Psort location: Cytoplasmic, score: 7.50.
  
    0.539
KXG89473.1
Hypothetical protein; KEGG: mel:Metbo_2153 9.1e-07 type ii site-specific deoxyribonuclease; Psort location: Cytoplasmic, score: 7.50.
       0.528
KXG90542.1
KEGG: ols:Olsu_0362 3.0e-72 tRNA (guanine-N(7)-)-methyltransferase K03439; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.482
KXG90882.1
THUMP domain protein; KEGG: ols:Olsu_0578 4.0e-157 THUMP domain-containing protein; K12297 23S rRNA (guanine2445-N2)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.479
KXG90864.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
     0.439
KXG90840.1
KEGG: mox:DAMO_2815 2.7e-135 putative ABC transporter, ATP-binding protein with duplicated ATPase domains K06158; Psort location: Cytoplasmic, score: 9.97.
 
    0.410
KXG90740.1
NusB family protein; KEGG: ols:Olsu_1070 5.4e-43 NusB/RsmB/TIM44; K03500 16S rRNA (cytosine967-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.406
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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