STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89473.1Hypothetical protein; KEGG: mel:Metbo_2153 9.1e-07 type ii site-specific deoxyribonuclease; Psort location: Cytoplasmic, score: 7.50. (511 aa)    
Predicted Functional Partners:
KXG90745.1
KEGG: cff:CFF8240_1393 8.9e-192 restriction and modification enzyme CjeI; K01154 type I restriction enzyme, S subunit; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.898
KXG90618.1
Hypothetical protein; KEGG: fsc:FSU_1813 4.8e-41 hsdR; type I restriction-modification system, R subunit K01153.
  
 
 0.875
KXG89472.1
Hypothetical protein; KEGG: cag:Cagg_1378 1.6e-57 type II site-specific deoxyribonuclease; Psort location: Cytoplasmic, score: 7.50.
     
 0.790
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.585
KXG89470.1
Putative 23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: apv:Apar_0053 1.9e-72 TrmA family RNA methyltransferase; K00599; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.528
KXG90610.1
Toxin-antitoxin system, toxin component, Fic family; KEGG: pdn:HMPREF9137_0457 3.6e-21 purC_2; phosphoribosylaminoimidazole succinocarboxamide synthase; Psort location: Cytoplasmic, score: 7.50.
  
    0.462
KXG89471.1
Hypothetical protein.
       0.404
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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