STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89183.1ABC transporter, substrate-binding protein; KEGG: sah:SaurJH1_2478 1.4e-13 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 8.78; Belongs to the bacterial solute-binding protein 9 family. (414 aa)    
Predicted Functional Partners:
KXG89185.1
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 1.0e-25 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.995
KXG89184.1
KEGG: fma:FMG_0226 4.8e-58 zinc ABC transporter ATP-binding protein; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
 
 
 0.992
KXG91297.1
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 1.5e-24 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.971
KXG89182.1
Hypothetical protein; KEGG: sah:SaurJH1_2478 8.0e-14 ribulose-phosphate 3-epimerase K01783.
 
 
  0.943
KXG91296.1
KEGG: fma:FMG_0024 7.5e-53 putative zinc ABC transporter ATP-binding protein; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
 
 
 0.918
KXG89384.1
Iron dependent repressor, DNA binding domain protein; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.525
rpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 0.00086 50S ribosomal protein L28 K02902; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.474
KXG90486.1
Hypothetical protein.
  
     0.406
KXG91020.1
ABC transporter, ATP-binding protein; KEGG: bao:BAMF_0495 1.1e-53 vmlR; antibiotic efflux ATP-binding transport protein; Psort location: Cytoplasmic, score: 9.95.
  
     0.402
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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