STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG89192.1DEAD/DEAH box helicase; KEGG: bnm:BALAC2494_00455 4.6e-227 Hydrolase acting on acid anhydrides in phosphorous-containing anhydrides; Psort location: Cytoplasmic, score: 7.50. (947 aa)    
Predicted Functional Partners:
KXG91368.1
Putative oxoglutarate dehydrogenase inhibitor; KEGG: mxa:MXAN_3956 2.6e-09 adenylate cyclase; K01768 adenylate cyclase; Psort location: Extracellular, score: 8.91.
  
     0.593
KXG90825.1
KEGG: rdn:HMPREF0733_11412 9.9e-138 ABC transporter ATP-binding protein; Psort location: Cytoplasmic, score: 9.97.
  
     0.593
KXG88477.1
FHA domain protein; KEGG: rca:Rcas_2253 3.7e-05 adenylate cyclase; K01768 adenylate cyclase; Psort location: Cytoplasmic, score: 7.50.
  
     0.567
KXG89193.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.532
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
   
    0.485
KXG88521.1
GTP-binding protein TypA; KEGG: ccm:Ccan_14260 1.4e-152 GTP-binding protein typA/bipA-like protein K06207; Psort location: CytoplasmicMembrane, score: 8.78.
      
 0.482
KXG90811.1
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.412
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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