STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88828.1Putative flavodoxin; KEGG: tpl:TPCCA_0925 1.3e-16 nitrogenase (flavodoxin). (134 aa)    
Predicted Functional Partners:
KXG90987.1
KEGG: ols:Olsu_0499 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
     
 0.842
KXG88829.1
Hypothetical protein.
       0.532
KXG90804.1
Cysteine synthase A; KEGG: gvh:HMPREF9231_0553 2.2e-149 cysK; cysteine synthase A K01738; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 
  0.502
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
      
 0.478
KXG91322.1
Putative oxygen-independent coproporphyrinogen III oxidase; KEGG: ols:Olsu_0977 1.3e-80 coproporphyrinogen dehydrogenase K02495; Psort location: Cytoplasmic, score: 9.97.
    
 0.441
KXG89437.1
ABC transporter, ATP-binding protein; KEGG: cle:Clole_4052 3.8e-120 xenobiotic-transporting ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.422
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
   
   0.409
KXG91228.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
   0.404
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
  
   0.402
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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