STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88854.1EDD domain protein, DegV family. (344 aa)    
Predicted Functional Partners:
KXG90748.1
DAK2 domain fusion protein YloV; KEGG: efu:HMPREF0351_10092 8.9e-89 dhaK; glycerone kinase K07030; Psort location: Cytoplasmic, score: 7.50.
   0.943
KXG90746.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
    0.729
KXG88532.1
EDD domain protein, DegV family; Psort location: Cytoplasmic, score: 7.50.
  
     0.720
KXG88853.1
Phosphogluconate dehydrogenase, NAD binding domain protein; KEGG: ols:Olsu_1431 3.5e-94 3-hydroxyisobutyrate dehydrogenase K00020; Psort location: Cytoplasmic, score: 7.50.
       0.660
KXG88852.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.586
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.582
KXG88348.1
Peptidoglycan binding domain protein; KEGG: vma:VAB18032_04405 6.2e-17 cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 7.50.
  
     0.480
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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