STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88885.1EDD domain protein, DegV family; KEGG: mgf:MGF_3873 1.1e-17 DegV-like protein; Psort location: Cytoplasmic, score: 7.50. (289 aa)    
Predicted Functional Partners:
KXG90748.1
DAK2 domain fusion protein YloV; KEGG: efu:HMPREF0351_10092 8.9e-89 dhaK; glycerone kinase K07030; Psort location: Cytoplasmic, score: 7.50.
   0.991
KXG89360.1
EDD domain protein, DegV family; KEGG: mgf:MGF_3873 6.3e-09 DegV-like protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.774
KXG88532.1
EDD domain protein, DegV family; Psort location: Cytoplasmic, score: 7.50.
  
     0.735
KXG90746.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
    0.502
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
       0.443
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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