STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88723.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (220 aa)    
Predicted Functional Partners:
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.552
KXG88909.1
Hypothetical protein.
       0.527
KXG88442.1
Hypothetical protein; KEGG: efu:HMPREF0351_11643 1.1e-40 carB2; ATP-grasp superfamily protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.504
tyrS
tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
    
   0.501
KXG90890.1
KEGG: bbb:BIF_02005 5.3e-107 Carboxypeptidase S1; Psort location: CytoplasmicMembrane, score: 9.55.
    
 
 0.478
KXG90594.1
KEGG: clo:HMPREF0868_0486 4.2e-82 glycosyltransferase group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.443
KXG88340.1
Hypothetical protein.
       0.434
KXG88461.1
FG-GAP repeat protein; KEGG: npu:Npun_F1457 2.1e-21 outer membrane adhesin-like protein; Psort location: CytoplasmicMembrane, score: 9.36.
  
    0.425
topA
DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...]
   
   0.424
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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