rplD protein (Atopobium vaginae) - STRING interaction network

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Score

rplD

50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (208 aa)

Predicted Functional Partners:

rpsO

0.999

rpsB

0.999

rpsD

0.999

rpsK

0.999

rpsE

0.999

rpsH

0.999

rpsQ

0.999

rpmC

0.999

rpsC

0.999

rplV

0.999

Your Current Organism:

Atopobium vaginae

NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplV	HMPREF3232_01280	HMPREF3232_01276	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplD	rpmC	HMPREF3232_01280	HMPREF3232_01273	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L29; KEGG: apb:SAR116_2399 3.9e-08 50S ribosomal protein L29 K02904; Belongs to the universal ribosomal protein uL29 family.	0.999
rplD	rpsB	HMPREF3232_01280	HMPREF3232_00131	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein S2; KEGG: apb:SAR116_0519 8.4e-61 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.	0.999
rplD	rpsC	HMPREF3232_01280	HMPREF3232_01275	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplD	rpsD	HMPREF3232_01280	HMPREF3232_01248	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
rplD	rpsE	HMPREF3232_01280	HMPREF3232_01258	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999
rplD	rpsH	HMPREF3232_01280	HMPREF3232_01261	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.999
rplD	rpsK	HMPREF3232_01280	HMPREF3232_01249	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.999
rplD	rpsO	HMPREF3232_01280	HMPREF3232_00070	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rplD	rpsQ	HMPREF3232_01280	HMPREF3232_01272	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.999
rplV	rplD	HMPREF3232_01276	HMPREF3232_01280	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplV	rpmC	HMPREF3232_01276	HMPREF3232_01273	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein L29; KEGG: apb:SAR116_2399 3.9e-08 50S ribosomal protein L29 K02904; Belongs to the universal ribosomal protein uL29 family.	0.999
rplV	rpsB	HMPREF3232_01276	HMPREF3232_00131	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein S2; KEGG: apb:SAR116_0519 8.4e-61 30S ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.	0.972
rplV	rpsC	HMPREF3232_01276	HMPREF3232_01275	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplV	rpsD	HMPREF3232_01276	HMPREF3232_01248	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.982
rplV	rpsE	HMPREF3232_01276	HMPREF3232_01258	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.990
rplV	rpsH	HMPREF3232_01276	HMPREF3232_01261	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.983
rplV	rpsK	HMPREF3232_01276	HMPREF3232_01249	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.987
rplV	rpsO	HMPREF3232_01276	HMPREF3232_00070	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.980
rplV	rpsQ	HMPREF3232_01276	HMPREF3232_01272	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997