STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88433.1Hypothetical protein; KEGG: rdn:HMPREF0733_10697 1.0e-48 ppx; exopolyphosphatase K07067; Psort location: CytoplasmicMembrane, score: 8.16; Belongs to the DisA family. (358 aa)    
Predicted Functional Partners:
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
  
    0.852
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
  
    0.800
cysS
cysteine--tRNA ligase; KEGG: apv:Apar_1181 1.6e-192 cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.658
KXG88429.1
KEGG: ols:Olsu_1631 4.8e-74 TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
    0.624
KXG91367.1
Transcriptional regulator, MerR family; Psort location: Cytoplasmic, score: 7.50.
  
     0.584
KXG90800.1
STAS domain protein; KEGG: cni:Calni_0067 9.3e-10 anti-sigma regulatory factor, serine/threonine protein kinase; K04757 anti-sigma B factor; Psort location: Cytoplasmic, score: 7.50; Belongs to the anti-sigma-factor antagonist family.
  
     0.533
KXG88434.1
ATPase family protein; KEGG: crd:CRES_0206 1.7e-211 clpC; ATP-dependent Clp protease ATP-binding subunit K03696; Psort location: Cytoplasmic, score: 9.97; Belongs to the ClpA/ClpB family.
  
    0.529
KXG88428.1
Hypothetical protein.
       0.510
KXG90587.1
DHHA1 domain protein; KEGG: ase:ACPL_7211 4.0e-38 putative manganese-dependent inorganic pyrophosphatase K06881; Psort location: Cytoplasmic, score: 7.50.
      
 0.477
KXG88457.1
HAD hydrolase, family IIB; KEGG: apo:Arcpr_0814 4.3e-05 SPP-like hydrolase K07024.
  
     0.447
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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