STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsK-3Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (688 aa)    
Predicted Functional Partners:
KXG88583.1
KEGG: ols:Olsu_1705 0. 4-alpha-glucanotransferase; K00705 4-alpha-glucanotransferase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.967
KXG90627.1
KEGG: sor:SOR_1533 3.3e-240 PTS system, IIABC component; K02808 PTS system, sucrose-specific IIA component; K02809 PTS system, sucrose-specific IIB component K02810; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.957
KXG89446.1
Phosphotransferase system, EIIC; KEGG: pta:HPL003_08735 5.9e-92 PTS system beta-glucoside-specific transporter subunit IIABC; K02755 PTS system, beta-glucosides-specific IIA component; K02756 PTS system, beta-glucosides-specific IIB component K02757; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.957
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
 0.953
KXG90306.1
Phosphotransferase system, EIIC; KEGG: efa:EF0694 2.0e-130 PTS system fructose-specific transporter subunit IIBC; K02769 PTS system, fructose-specific IIB component K02770; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.946
KXG90307.1
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: ols:Olsu_0535 2.6e-50 PTS system D-fructose-specific IIA component (F1P-forming), Frc family; K02768 PTS system, fructose-specific IIA component; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.946
KXG88350.1
KEGG: ols:Olsu_1566 2.5e-148 ribose-phosphate pyrophosphokinase K00948; Psort location: Cytoplasmic, score: 9.97.
  
 0.946
KXG90628.1
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
 
 0.890
KXG90841.1
Pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; KEGG: ahe:Arch_1140 1.5e-38 SNO glutamine amidotransferase; K08681 glutamine amidotransferase; Psort location: Cytoplasmic, score: 7.50.
   
 0.872
KXG90593.1
Inosine 5-monophosphate dehydrogenase; KEGG: ols:Olsu_1037 1.1e-239 IMP dehydrogenase K00088; Psort location: Cytoplasmic, score: 7.50.
   
 0.872
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.