STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88458.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (735 aa)    
Predicted Functional Partners:
KXG89579.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.757
KXG90315.1
Acetyltransferase, GNAT family; KEGG: rho:RHOM_09780 1.3e-11 tRNA (guanine-N1)-methyltransferase; K00554 tRNA (guanine37-N1)-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
     0.635
KXG89578.1
UvrD/REP helicase; KEGG: kol:Kole_1028 4.6e-45 Exodeoxyribonuclease V; Psort location: Cytoplasmic, score: 9.97; Belongs to the helicase family. UvrD subfamily.
  
     0.615
KXG90988.1
Hypothetical protein; KEGG: ols:Olsu_0501 3.5e-181 superfamily I DNA and RNA helicase-like protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 7.50.
  
     0.594
KXG90773.1
Tetratricopeptide repeat protein; KEGG: sur:STAUR_2179 4.4e-09 Ser/Thr kinase family protein.
  
     0.585
KXG90326.1
Hypothetical protein; KEGG: cgo:Corgl_0997 1.3e-25 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase; Psort location: Cytoplasmic, score: 7.50.
  
     0.548
KXG91248.1
KEGG: sor:SOR_1377 9.3e-142 licA; choline kinase; Psort location: Cytoplasmic, score: 7.50.
  
     0.483
KXG88456.1
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; KEGG: ols:Olsu_1685 2.8e-108 UDP-N-acetylmuramyl tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Psort location: Cytoplasmic, score: 7.50; Belongs to the MurCDEF family. MurE subfamily.
       0.481
KXG88457.1
HAD hydrolase, family IIB; KEGG: apo:Arcpr_0814 4.3e-05 SPP-like hydrolase K07024.
       0.481
KXG91247.1
Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.465
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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