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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88483.1Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 1.8e-31 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00. (693 aa)    
Predicted Functional Partners:
KXG88485.1
ABC transporter, ATP-binding protein; KEGG: cle:Clole_1569 2.2e-76 sulfate-transporting ATPase K02003; Psort location: CytoplasmicMembrane, score: 8.78.
 
 0.993
KXG90508.1
KEGG: gfo:GFO_0536 3.5e-62 ABC-type transporter ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
  
 0.884
KXG89331.1
ABC transporter, ATP-binding protein; KEGG: taz:TREAZ_1964 5.5e-73 macrolide export ATP-binding/permease MacB K02003; Psort location: CytoplasmicMembrane, score: 9.96.
  
 0.884
KXG88486.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: cby:CLM_2346 2.8e-46 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.51.
 
 
 0.820
KXG88484.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.572
KXG89330.1
Efflux ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c11620 3.2e-94 putative ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.536
KXG88487.1
Response regulator receiver domain protein; KEGG: bbp:BBPR_1604 2.5e-29 two-component response regulator K07776; Psort location: Cytoplasmic, score: 9.97.
  
   
 0.529
KXG88861.1
LytTr DNA-binding domain protein; KEGG: pha:PSHAa1405 0.0029 response regulator in two-component regulatory system K02477.
 
     0.463
KXG91288.1
Cna protein B-type domain protein; Psort location: Cellwall, score: 9.20.
 
    0.423
KXG88536.1
Sortase, SrtB family; KEGG: apv:Apar_0032 1.3e-73 sortase; K08600 sortase B.
  
     0.416
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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