STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88506.1Sporulation initiation inhibitor protein Soj; KEGG: nmh:NMBH4476_0189 5.0e-63 chromosome partitioning protein, ParA family K03496; Psort location: CytoplasmicMembrane, score: 9.96. (263 aa)    
Predicted Functional Partners:
KXG88505.1
Putative stage 0 sporulation protein J; KEGG: cti:RALTA_A3100 6.9e-50 parB1; exonuclease involved in chromosome partitioning, parb protein K03497; Psort location: Cytoplasmic, score: 9.97; Belongs to the ParB family.
 
 0.998
rsmG
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.885
KXG91136.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.853
KXG88513.1
Putative replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
 
 0.798
KXG91135.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.795
KXG90702.1
Hypothetical protein.
  
 
 0.795
KXG89615.1
Repeat protein; KEGG: ckn:Calkro_0850 4.4e-09 cellulase., cellulose 1,4-beta-cellobiosidase; Psort location: Cellwall, score: 9.21.
   
 
 0.607
KXG89312.1
GA module; KEGG: dme:Dmel_CG18255 2.2e-23 Strn-Mlck; Stretchin-Mlck K00907; Psort location: Cellwall, score: 9.39.
   
 
 0.607
KXG89444.1
Repeat protein; KEGG: bme:BMEII0148 5.2e-05 serine protease.
   
 
 0.607
KXG88383.1
Repeat protein; KEGG: btl:BALH_2309 5.1e-09 bacillolysin K01400; Psort location: Cellwall, score: 9.98.
   
 
 0.607
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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