STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXG88536.1Sortase, SrtB family; KEGG: apv:Apar_0032 1.3e-73 sortase; K08600 sortase B. (299 aa)    
Predicted Functional Partners:
KXG89330.1
Efflux ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c11620 3.2e-94 putative ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.572
KXG89840.1
Cna protein B-type domain protein; Psort location: Cytoplasmic, score: 7.50.
 
 
   0.551
KXG88535.1
Putative pyridoxal kinase; KEGG: apv:Apar_0030 2.6e-91 phosphomethylpyrimidine kinase type-1; K00868 pyridoxine kinase; Psort location: Cytoplasmic, score: 7.50.
 
     0.542
KXG90792.1
LPXTG-motif protein cell wall anchor domain protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
 
   0.535
KXG90935.1
LPXTG-motif protein cell wall anchor domain protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
 
   0.534
KXG91288.1
Cna protein B-type domain protein; Psort location: Cellwall, score: 9.20.
 
 
   0.519
KXG90773.1
Tetratricopeptide repeat protein; KEGG: sur:STAUR_2179 4.4e-09 Ser/Thr kinase family protein.
  
     0.480
KXG89579.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.480
KXG88342.1
Hypothetical protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
  
     0.439
KXG88483.1
Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 1.8e-31 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.416
Your Current Organism:
Atopobium vaginae
NCBI taxonomy Id: 82135
Other names: A. vaginae, ATCC BAA-55, ATCC:BAA 55, ATCC:BAA:55, CCUG 38953, CIP 106431, DSM 15829, NCTC 13935
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