STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN73021.1Autotransporter secretion inner membrane protein TamB. (1501 aa)    
Predicted Functional Partners:
SFN72995.1
Autotransporter secretion outer membrane protein TamA.
 
 0.998
SFN95904.1
Hypothetical protein.
  
     0.697
SFO09510.1
Transglycosylase SLT domain-containing protein.
 
     0.642
SFO63386.1
Hypothetical protein.
  
     0.596
SFO29930.1
Hypothetical protein.
  
     0.565
SFN72970.1
Glucokinase; Belongs to the bacterial glucokinase family.
       0.553
SFO31066.1
Rod shape-determining protein MreD.
  
     0.536
SFO38340.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
  
 0.528
SFN73074.1
Hypothetical protein.
     
 0.509
SFN73044.1
MarR family transcriptional regulator, transcriptional regulator for hemolysin.
       0.507
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.