STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN76323.1Two-component system, response regulator RegA. (182 aa)    
Predicted Functional Partners:
SFN76258.1
Two-component system, sensor histidine kinase RegB.
 0.996
SFN76289.1
Protein SCO1/2.
  
  
 0.808
SFO62908.1
Protein of unknown function.
  
     0.688
SFO78015.1
Signal transduction histidine kinase.
 
 
 0.684
SFO48254.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
 
 0.649
SFN76356.1
Transposase.
       0.578
SFO86794.1
Antitoxin CptB.
  
     0.569
SFN94843.1
Protein SCO1/2.
  
  
 0.530
SFN83459.1
dCTP deaminase.
  
     0.501
SFN76221.1
PAS domain-containing protein.
     
 0.495
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.