STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BetBBetaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (481 aa)    
Predicted Functional Partners:
BetA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
 0.969
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
  
 0.938
SFP06002.1
Choline dehydrogenase.
 
 0.926
SFO56036.1
Choline dehydrogenase.
 
 0.920
SFP01117.1
Choline dehydrogenase.
 
 0.920
SFO25882.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.911
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.868
ChoX
Glycine betaine/proline transport system substrate-binding protein.
 
    0.638
ChoV
Glycine betaine/proline transport system ATP-binding protein.
 
     0.435
GltB
Glutamate synthase (NADPH) large subunit.
  
  
 0.419
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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