STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN94032.1Transcriptional regulator, XRE family with cupin sensor. (184 aa)    
Predicted Functional Partners:
SFN93990.1
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
 
  
 0.781
SFO82481.1
Binding-protein-dependent transport system inner membrane component.
 
 
 
 0.571
SFP03627.1
Putative spermidine/putrescine transport system permease protein.
 
 
 
 0.566
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
 0.548
SFP00177.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
  
  
 0.492
SFO82423.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
  
 
 0.479
SFN96216.1
Transcriptional regulator, XRE family with cupin sensor.
 
 
0.475
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.465
SFO06996.1
GntR family transcriptional regulator.
  
  
 0.457
PhnF
GntR family transcriptional regulator, phosphonate transport system regulatory protein.
  
  
 0.457
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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