STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN98908.1Holin of 3TMs, for gene-transfer release. (177 aa)    
Predicted Functional Partners:
SFN98860.1
Predicted Peptidoglycan domain-containing protein.
 
    0.969
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
     0.788
SFP12461.1
Phasin protein.
  
     0.770
SFN99857.1
Hypothetical protein.
  
     0.739
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.732
SFN95904.1
Hypothetical protein.
  
     0.726
SFN98953.1
Cytochrome c-type biogenesis protein CcmF.
       0.721
SFN98990.1
Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.
       0.721
SFO08983.1
Hypothetical protein.
  
     0.721
SFO08876.1
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
  
     0.714
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.