STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO22478.1Hypothetical protein. (77 aa)    
Predicted Functional Partners:
SFO22497.1
Prohead peptidase. Unknown type peptidase. MEROPS family U35.
 
     0.936
SFO22460.1
Phage portal protein, HK97 family.
 
     0.925
SFO22562.1
Protein of unknown function.
 
     0.905
SFO22545.1
Head-tail adaptor.
 
     0.902
SFO22513.1
Phage major capsid protein, HK97 family.
 
     0.891
SFO22530.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
     0.891
SFO22587.1
Phage tail tube protein, GTA-gp10.
 
     0.857
SFO22611.1
Phage tail tape measure protein, lambda family.
 
     0.853
SFO22574.1
Phage major tail protein, TP901-1 family.
 
     0.835
SFO22639.1
Phage conserved hypothetical protein BR0599.
 
     0.759
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.