STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO23085.1Uncharacterized domain 1-containing protein. (147 aa)    
Predicted Functional Partners:
SFO23106.1
Acyl-coenzyme A thioesterase PaaI, contains HGG motif.
  
0.991
SFO23129.1
Multidrug resistance protein, MATE family.
  
    0.859
SFO23065.1
DNA-binding transcriptional regulator, MerR family.
  
  
 0.730
SFO22961.1
3-hydroxyacyl-CoA dehydrogenase.
 
 
 0.638
SFO23048.1
DNA-binding transcriptional regulator, MerR family.
  
  
 0.593
SFO79003.1
Aryl carrier domain-containing protein.
  
 
 0.567
SFO22981.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.492
SFO23026.1
Hypothetical protein.
 
  
 0.486
SFO23003.1
Glutathione S-transferase; Belongs to the GST superfamily.
 
 
   0.485
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.452
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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