STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO23829.13-hydroxybutyrate dehydrogenase. (260 aa)    
Predicted Functional Partners:
SFO65489.1
3-oxoacid CoA-transferase subunit A.
 
 0.925
SFO65502.1
3-oxoacid CoA-transferase subunit B.
 
 0.920
SFO75411.1
hydroxymethylglutaryl-CoA lyase.
   
 
 0.905
BetC
Choline-sulfatase.
   
 0.584
SFN81098.1
NTE family protein.
 
   0.510
FabD
[Acyl-carrier-protein] S-malonyltransferase.
 
 
 0.448
SFN98548.1
Hypothetical protein.
   
 0.445
SFO08983.1
Hypothetical protein.
 
 0.435
PhaZ
Poly(3-hydroxybutyrate) depolymerase.
  
   
 0.430
PaaZ
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
  
 0.426
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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