STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO25519.1Delta1-piperideine-2-carboxylate reductase. (338 aa)    
Predicted Functional Partners:
SFO64707.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family.
  
  
 
0.916
SFO64537.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family.
  
  
 
0.915
SFO25543.1
Proline racemase.
     
 0.774
SFN97784.1
Solute carrier family 10 (sodium/bile acid cotransporter), member 7.
  
    0.591
SFO25574.1
iron(III) transport system substrate-binding protein.
       0.591
SFO64498.1
Predicted aconitase subunit 1 /predicted aconitase subunit 2.
 
   
 0.506
SFO25599.1
iron(III) transport system permease protein.
       0.462
SFO25627.1
iron(III) transport system ATP-binding protein.
       0.458
SFN81906.1
Zn-dependent dipeptidase, dipeptidase homolog.
  
    0.432
SFO30518.1
Dipeptidase AC. Metallo peptidase. MEROPS family M19.
  
    0.432
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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