STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO29681.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
SFO29640.1
NADH:ubiquinone oxidoreductase subunit.
 
     0.943
MlaD
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
       0.857
SFO99034.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.704
SFO39115.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.687
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.687
SFO76358.1
Methyltransferase domain-containing protein.
  
     0.643
SFN85543.1
Hypothetical protein.
  
     0.636
atpF
F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.628
SFO83556.1
Uncharacterized conserved protein, UPF0335 family; Belongs to the UPF0335 family.
  
     0.590
SFO93036.1
HAD-superfamily class IIA hydrolase, TIGR01459.
  
     0.562
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.