STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO31483.1Transcriptional regulator, AraC family with amidase-like domain. (333 aa)    
Predicted Functional Partners:
SFO08180.1
Sarcosine oxidase subunit delta.
 
    0.684
SFO08211.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
    0.600
SFO31458.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
       0.573
SFO63237.1
Dimethylglycine dehydrogenase.
 
     0.548
SFO31507.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
    0.517
SFO08108.1
Sarcosine oxidase subunit beta.
  
     0.508
SFO08238.1
Sarcosine oxidase subunit gamma.
 
    0.505
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.