STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO43838.13-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit. (398 aa)    
Predicted Functional Partners:
SFN94545.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.933
SFO55932.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
  
  
 
0.911
SFO73662.1
NTE family protein.
 
      0.860
napA
Periplasmic nitrate reductase subunit NapA apoprotein; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
  
 0.854
NirD
Assimilatory nitrite reductase (NAD(P)H) small subunit.
 
 0.797
RsmD
16S rRNA (guanine966-N2)-methyltransferase.
       0.793
SFO74677.1
Ferredoxin, 2Fe-2S.
 
  
 0.770
SFO56377.1
Naphthalene 1,2-dioxygenase system ferredoxin subunit.
  
 0.755
SFO30872.1
Ferredoxin, 2Fe-2S.
 
  
 0.743
GltB
Glutamate synthase (NADPH) large subunit.
  
  
 0.691
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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