STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO48720.1Type VI secretion system protein ImpA. (378 aa)    
Predicted Functional Partners:
TssB
Type VI secretion system protein ImpB.
 
  
 0.983
TssG
Type VI secretion system protein ImpH.
 
  
 0.978
SFO48762.1
Type VI secretion system secreted protein Hcp.
 
  
 0.969
TssC
Type VI secretion system protein ImpC.
 
  
 0.967
SFO48858.1
Type VI secretion system protein ImpK.
 
  
 0.956
TssI
Type VI secretion system secreted protein VgrG.
 
 
 0.942
TssF
Type VI secretion system protein ImpG.
 
  
 0.924
SFO48774.1
Type VI secretion system protein ImpF.
 
  
 0.923
TssK
Type VI secretion system protein ImpJ.
 
  
 0.916
TssJ
Type VI secretion system protein VasD.
 
  
 0.910
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.