STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO56822.1Acyl dehydratase. (154 aa)    
Predicted Functional Partners:
SFO56769.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 0.890
SFO56860.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 0.854
SFO46536.1
Acyl transferase domain-containing protein.
  
 0.836
SFO56840.1
Rieske [2Fe-2S] domain-containing protein.
 
   
 0.825
SFO56916.1
Acetyl-CoA acetyltransferase.
 
 
 0.819
SFO56894.1
Hypothetical protein.
 
   0.802
SFO56788.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 
 0.794
SFO56805.1
Hypothetical protein.
       0.773
SFO56876.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
  
 
 0.598
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
   
  
 0.565
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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