STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO59717.1Biotin transport system ATP-binding protein. (246 aa)    
Predicted Functional Partners:
SFO59734.1
Biotin transport system permease protein.
 
 0.999
SFO59751.1
Biotin transport system substrate-specific component.
 
 
 0.998
SFN88386.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
    
 0.730
LptB
Lipopolysaccharide export system ATP-binding protein.
 
   
 
0.704
CbiE
precorrin-6Y C5,15-methyltransferase (decarboxylating).
  
  
 0.698
SFP03599.1
Putative spermidine/putrescine transport system ATP-binding protein.
 
 
 
0.669
PhnD
Phosphonate transport system substrate-binding protein.
    
  0.661
SFO25627.1
iron(III) transport system ATP-binding protein.
 
 
 
0.650
SFO67025.1
Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
0.633
SFO26809.1
Iron complex transport system ATP-binding protein.
  
 
0.621
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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