STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO61861.1DNA-binding transcriptional regulator LsrR, DeoR family. (310 aa)    
Predicted Functional Partners:
SFO61716.1
Sorbitol-binding protein /mannitol-binding protein.
 
     0.717
SFO61759.1
Sorbitol ABC transporter membrane protein.
 
   
 0.670
SFO61737.1
Sorbitol ABC transporter membrane protein.
 
   
 0.649
SFO61801.1
Mannitol 2-dehydrogenase.
 
     0.537
SFO61840.1
FGGY-family pentulose kinase.
 
     0.499
SFO61819.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
 
     0.472
Gap
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.463
xylB
Xylulokinase.
 
  
 0.437
SFO61902.1
Transcriptional regulator, BadM/Rrf2 family.
     
 0.412
SFO82163.1
Predicted homoserine dehydrogenase, contains C-terminal SAF domain.
 
     0.411
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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