STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO64157.1Rieske 2Fe-2S family protein. (412 aa)    
Predicted Functional Partners:
SFO64172.1
Ferredoxin-NADP reductase.
  
 0.975
SFO38198.1
Ferredoxin-NADP reductase.
  
 0.894
HpbA
Hypothetical protein.
 
 
 0.859
SFO64187.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.829
SFO57779.1
2,4-dienoyl-CoA reductase.
 
 
 0.724
SFO78123.1
Hypothetical protein.
 
 
 0.703
SFO08180.1
Sarcosine oxidase subunit delta.
 
    0.662
SFO64142.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.662
SFO08211.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 
 0.636
FdhA
Glutathione-independent formaldehyde dehydrogenase.
  
  
 0.577
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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