STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO64739.1Transcriptional regulator, GntR family. (232 aa)    
Predicted Functional Partners:
SFO00065.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.758
SFO60185.1
GntR family transcriptional regulator, colanic acid and biofilm gene transcriptional regulator.
  
     0.757
SFO64723.1
4-hydroxy-tetrahydrodipicolinate synthase.
 
     0.712
SFN96850.1
Transcriptional regulator, GntR family.
 
  
 0.707
SFO21872.1
Transcriptional regulator, GntR family.
 
  
 0.706
SFO76156.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.635
SFO93570.1
DNA-binding transcriptional regulator, GntR family.
  
     0.578
SFO64675.1
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-).
 
     0.498
SFO64498.1
Predicted aconitase subunit 1 /predicted aconitase subunit 2.
 
     0.446
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.