STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO72540.1Protein of unknown function. (91 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.773
SFO72559.1
Hypothetical protein.
       0.773
argH
Argininosuccinate lyase.
       0.773
SFO43270.1
Glycosyltransferase, GT2 family.
  
     0.598
SFO43204.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.590
SFO72599.1
Thiol-disulfide isomerase or thioredoxin.
       0.567
SFO72500.1
TIGR02302 family protein.
       0.554
SFN88114.1
OmpA family protein.
  
     0.516
SFO95523.1
Hypothetical protein.
  
     0.443
SFO16909.1
Hypothetical protein.
  
     0.413
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.