STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO79936.1Glycine/D-amino acid oxidase. (441 aa)    
Predicted Functional Partners:
SFO80065.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 0.865
SFP26940.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 0.842
SFO08211.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
 
 0.776
SFO79695.1
2-haloacid dehalogenase.
 
   
 0.773
SFO79751.1
Acetyltransferase (GNAT) family protein.
  
     0.767
SFO79658.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.766
SFO79836.1
Peptide/nickel transport system substrate-binding protein.
  
     0.762
SFO79817.1
Putative hydrolase of the HAD superfamily.
 
   
 0.760
SFO79910.1
DNA-binding transcriptional regulator, Lrp family.
 
    0.737
SFO79875.1
Peptide/nickel transport system permease protein.
  
    0.711
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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