STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO86089.1Plasmid stability protein. (87 aa)    
Predicted Functional Partners:
vapC
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 
 0.984
SFP24109.1
Hypothetical protein.
 
 
 
 0.898
vapC-2
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 
 0.690
SFP23927.1
Plasmid stabilization system protein ParE.
  
     0.552
SFO86234.1
P-type conjugative transfer protein TrbJ.
       0.463
SFO86286.1
Type IV secretion system protein TrbL.
       0.428
SFO86116.1
Type IV secretion system protein VirB11.
       0.426
SFO86149.1
Type IV secretion system protein VirB2.
       0.426
SFO86175.1
Type IV secretion system protein VirB3.
       0.426
SFO86209.1
Type IV secretion system protein VirB4.
       0.413
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.