STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO89865.1Transcriptional regulator, BadM/Rrf2 family. (152 aa)    
Predicted Functional Partners:
SFN99666.1
Cysteine desulfurase.
  
 0.937
SFO34886.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.776
SFO89904.1
Predicted dehydrogenase.
       0.773
SFN87081.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
 
  
 0.737
SFO89834.1
Hypothetical protein.
       0.707
SFO89804.1
Putative hydrolases of HD superfamily.
       0.668
SufB
Iron-regulated ABC transporter membrane component SufB.
     
 0.650
SFO79183.1
Transcriptional regulator, BadM/Rrf2 family.
  
   
 0.562
SFO40445.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
  
 0.561
SFN82745.1
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
  
  
 0.555
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.