STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO92276.1Outer membrane receptor for ferrienterochelin and colicins. (713 aa)    
Predicted Functional Partners:
SFO73598.1
Protein TonB.
 
 
 0.753
TolA
Cell division and transport-associated protein TolA.
  
 
 0.708
SFN73126.1
Hypothetical protein.
 
  
 0.689
SFP08494.1
PepSY-associated TM region.
  
  
 0.639
SFO78679.1
TonB dependent receptor.
 
 
 0.638
SFO47980.1
Enterobactin synthetase component F.
 
  
 0.592
SFN70092.1
Enterobactin synthetase component F.
 
  
 0.572
SFO79286.1
TonB-dependent Receptor Plug Domain.
  
  
 0.542
RocF
Arginase; Belongs to the arginase family.
       0.531
SFN70182.1
DNA-binding beta-propeller fold protein YncE.
 
  
 0.527
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.