STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP14475.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
SFP14445.1
Type IV secretion system protein VirD4.
 
     0.945
SFP14869.1
Type IV secretion system protein VirB3.
 
     0.812
SFP14898.1
Type IV secretion system protein VirB4.
 
     0.800
SFP14841.1
Type IV secretion system protein VirB2.
 
     0.799
SFO85747.1
Helix-turn-helix domain-containing protein.
 
   
 0.791
SFP24174.1
Protein of unknown function.
 
     0.789
SFO85957.1
Type IV secretory pathway, VirD2 components (relaxase).
 
     0.788
SFO85801.1
Protein of unknown function.
 
     0.783
SFO85854.1
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C.
 
     0.783
SFO85880.1
Uncharacterized conserved protein, DUF736 family.
 
     0.782
Your Current Organism:
Paracoccus pantotrophus
NCBI taxonomy Id: 82367
Other names: ATCC 35512, DSM 2944, JCM 21485, LMD 82.5, NBRC 102493, NCCB 82005, P. pantotrophus, Thiosphaera pantotropha, strain GB 17, strain GB17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.